PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00098.54
Common NameAMTR_s00098p00170370, LOC18427913
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family bHLH
Protein Properties Length: 225aa    MW: 24865.3 Da    PI: 8.3286
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00098.54genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.81.7e-1266113555
                                              HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                                      HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                              +  rE+ RRdr+N++f eL  +l +    + +K +Ka+iL  A++ +++Lq
  evm_27.model.AmTr_v1.0_scaffold00098.54  66 KACREKMRRDRLNDRFLELGAILEPG---RPPKTDKATILSDAIRVLNQLQ 113
                                              678**********************8...89*******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.28161112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.54E-965117No hitNo description
PfamPF000104.7E-1065113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.19E-1467135IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.4E-1167118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.7E-1468134IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MGSPQNTNWD FDGIMVDDAF WISQASNGVP NSSVDVNVGF DGPSCNQNLC SRKRPRSEPC  60
SGSGSKACRE KMRRDRLNDR FLELGAILEP GRPPKTDKAT ILSDAIRVLN QLQSEARKLK  120
EANDELQEKI KDLKAEKNEL RDEKLRLKAD KERLEQQVKA INTPPPSPFI PHPMAFSSPQ  180
GPAVGAGAKM MPFMGYQPTV AMWQWMPPAA VDTSQDHVLR PPVA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006837018.11e-166PREDICTED: transcription factor bHLH115
SwissprotQ9C6828e-81BH115_ARATH; Transcription factor bHLH115
TrEMBLW1NS651e-166W1NS65_AMBTC; Uncharacterized protein
STRINGVIT_12s0059g02650.t011e-84(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP7551766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51070.14e-82bHLH family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]